Variant report

Variant	rs10045892
Chromosome Location	chr5:124597700-124597701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11241796	0.89[EUR][1000 genomes]
rs11241797	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11959358	0.85[EUR][1000 genomes]
rs1347923	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1347925	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1348584	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1439582	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1439583	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1439586	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1439611	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1444659	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2118999	0.82[EUR][1000 genomes]
rs4351146	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5011755	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6595604	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6879987	0.84[EUR][1000 genomes]
rs713163	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7731555	0.86[EUR][1000 genomes]
rs7737255	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs996377	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124593600-124598600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:124596800-124597800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr5:124596800-124598600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:124597400-124599600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:124597600-124597800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr5:124597600-124597800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:124597600-124598400	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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