Variant report

Variant	rs10046497
Chromosome Location	chr7:11606884-11606885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10239942	0.87[EUR][1000 genomes]
rs10239990	0.87[EUR][1000 genomes]
rs10255374	0.87[EUR][1000 genomes]
rs10255378	0.87[EUR][1000 genomes]
rs1034742	0.80[ASN][1000 genomes]
rs16	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs19	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2189641	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs23	0.86[ASN][1000 genomes]
rs2354956	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2354957	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs24	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs25	0.81[ASN][1000 genomes]
rs28	0.85[ASN][1000 genomes]
rs28473759	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28744593	0.81[AMR][1000 genomes]
rs29	0.85[ASN][1000 genomes]
rs32	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs419	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs420	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs425	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs426	0.82[EUR][1000 genomes]
rs4263648	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4368872	0.81[ASN][1000 genomes]
rs56400537	0.80[ASN][1000 genomes]
rs61	0.87[ASN][1000 genomes]
rs64	0.83[ASN][1000 genomes]
rs6979760	0.83[EUR][1000 genomes]
rs7780750	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7780948	0.87[EUR][1000 genomes]
rs7799490	0.87[EUR][1000 genomes]
rs7799796	0.87[EUR][1000 genomes]
rs83	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11577400-11615200	Weak transcription	Placenta	Placenta
2	chr7:11606000-11609200	Weak transcription	Liver	Liver
3	chr7:11606200-11609800	Weak transcription	A549	lung
4	chr7:11606800-11607200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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