Variant report

Variant	rs10052107
Chromosome Location	chr5:177502720-177502721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:177487426..177490684-chr5:177499870..177503540,6	MCF-7	breast:
2	chr20:49411038..49411556-chr5:177502509..177503126,2	MCF-7	breast:
3	chr5:177501697..177504213-chr5:177591453..177593229,2	K562	blood:
4	chr5:177487397..177490398-chr5:177500448..177504603,3	MCF-7	breast:
5	chr5:177502051..177503760-chr5:177557865..177558697,4	MCF-7	breast:
6	chr5:177488805..177489605-chr5:177502659..177503703,3	MCF-7	breast:
7	chr5:177502486..177503799-chr5:177572565..177574764,72	MCF-7	breast:
8	chr5:177501753..177504683-chr5:177581029..177582623,2	K562	blood:
9	chr5:177502561..177503526-chr5:177548549..177549317,2	MCF-7	breast:
10	chr5:177502585..177503464-chr5:177537369..177538257,2	MCF-7	breast:
11	chr5:177502685..177509813-chr5:177536412..177543158,8	K562	blood:
12	chr5:177502572..177503748-chr5:177547578..177548501,4	MCF-7	breast:
13	chr5:177502118..177506821-chr5:177630182..177634773,7	MCF-7	breast:
14	chr5:177500192..177502882-chr5:177557753..177559372,2	K562	blood:
15	chr5:177407733..177409330-chr5:177502018..177504540,2	MCF-7	breast:
16	chr5:177502594..177503991-chr5:177578124..177579458,23	MCF-7	breast:
17	chr5:177502635..177503209-chr5:177592228..177592998,2	MCF-7	breast:
18	chr5:177501622..177505245-chr5:177630293..177635895,8	MCF-7	breast:
19	chr5:177502576..177503826-chr5:177590817..177591871,19	K562	blood:
20	chr5:177501649..177503512-chr5:177630511..177633228,3	K562	blood:
21	chr5:177502598..177505012-chr5:177659376..177662202,2	K562	blood:
22	chr5:177502412..177503437-chr5:177590940..177591794,4	MCF-7	breast:
23	chr5:177501438..177504089-chr5:177638746..177641033,2	K562	blood:
24	chr5:177502481..177503770-chr5:177590804..177591932,21	MCF-7	breast:
25	chr5:177500972..177503850-chr5:177659363..177662027,2	K562	blood:
26	chr5:177500353..177503253-chr5:177580681..177583610,3	K562	blood:
27	chr5:177501683..177503355-chr5:177590379..177593305,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000145916	Chromatin interaction
ENSG00000145912	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000145911	Chromatin interaction
ENSG00000251211	Chromatin interaction
ENSG00000197451	Chromatin interaction
ENSG00000175309	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10055575	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10064472	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10066407	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13165367	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4074778	0.80[CHB][hapmap]
rs4246820	0.80[ASN][1000 genomes]
rs4246824	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4318801	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62390494	0.95[ASN][1000 genomes]
rs6601210	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865719	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv883186	chr5:177376317-177549491	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
4	nsv1021198	chr5:177386267-177611648	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1021060	chr5:177386344-177539867	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv600391	chr5:177488281-177549491	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177493400-177506800	Weak transcription	Right Atrium	heart
2	chr5:177501600-177503400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:177501600-177504000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:177501800-177502800	Enhancers	Hela-S3	cervix
5	chr5:177502000-177503000	Weak transcription	K562	blood
6	chr5:177502200-177503600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:177502400-177503000	Bivalent Enhancer	Thymus	Thymus
8	chr5:177502400-177503000	Bivalent Enhancer	HepG2	liver
9	chr5:177502400-177503200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr5:177502600-177503000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:177502600-177503400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:177502600-177503600	Enhancers	Fetal Thymus	thymus

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