Variant report

Variant	rs10053361
Chromosome Location	chr5:57596329-57596330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10038241	1.00[AMR][1000 genomes]
rs10051307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061889	0.87[AMR][1000 genomes]
rs10079643	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355320	1.00[AMR][1000 genomes]
rs73096888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099022	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73757734	0.85[AMR][1000 genomes]
rs7721206	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57591400-57596400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:57595200-57596400	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links