Variant report

Variant	rs10054018
Chromosome Location	chr5:76163280-76163281
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10055746	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10076411	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12152714	1.00[EUR][1000 genomes]
rs12152998	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13160667	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1343712	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6453259	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6453260	0.94[EUR][1000 genomes]
rs6859961	0.99[EUR][1000 genomes]
rs6860303	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9885484	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76153000-76174400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:76158400-76165200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:76159000-76169600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:76159200-76163600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:76159200-76163600	Weak transcription	Fetal Intestine Small	intestine
6	chr5:76159200-76163600	Weak transcription	Stomach Mucosa	stomach
7	chr5:76162000-76163400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:76162200-76164200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:76162400-76163400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:76162800-76163600	Enhancers	A549	lung
11	chr5:76162800-76164000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:76162800-76164000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:76162800-76164600	Enhancers	Primary hematopoietic stem cells	blood
14	chr5:76163000-76163400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:76163000-76163400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:76163000-76164000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:76163000-76164000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:76163000-76164000	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links