Variant report

Variant	rs10054134
Chromosome Location	chr5:46292277-46292278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10037109	0.86[ASN][1000 genomes]
rs10045429	0.97[ASN][1000 genomes]
rs10056067	0.80[EUR][1000 genomes]
rs10058966	0.86[ASN][1000 genomes]
rs10059495	0.92[ASN][1000 genomes]
rs10060528	0.91[ASN][1000 genomes]
rs10060661	0.94[ASN][1000 genomes]
rs10061101	0.80[EUR][1000 genomes]
rs10063520	0.92[ASN][1000 genomes]
rs10065314	0.94[ASN][1000 genomes]
rs10070671	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10074383	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076113	0.81[ASN][1000 genomes]
rs10462113	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10472415	0.92[ASN][1000 genomes]
rs10473416	0.84[EUR][1000 genomes]
rs10941746	0.87[AFR][1000 genomes]
rs10941759	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10941760	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10941789	0.81[ASN][1000 genomes]
rs11745763	0.83[ASN][1000 genomes]
rs11750244	0.80[ASN][1000 genomes]
rs12514163	0.89[ASN][1000 genomes]
rs12514178	0.85[ASN][1000 genomes]
rs12516885	0.87[ASN][1000 genomes]
rs12521795	0.81[ASN][1000 genomes]
rs12523279	0.92[ASN][1000 genomes]
rs12657760	0.91[ASN][1000 genomes]
rs12657764	0.91[ASN][1000 genomes]
rs12697543	0.82[EUR][1000 genomes]
rs12697557	0.91[ASN][1000 genomes]
rs13161439	0.93[ASN][1000 genomes]
rs13168085	0.92[ASN][1000 genomes]
rs13168483	0.97[ASN][1000 genomes]
rs13180509	0.83[EUR][1000 genomes]
rs13358908	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13436334	0.83[EUR][1000 genomes]
rs34186279	0.86[AFR][1000 genomes]
rs35503553	0.92[ASN][1000 genomes]
rs4975911	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4975912	0.87[ASN][1000 genomes]
rs4975913	0.88[ASN][1000 genomes]
rs4975914	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4975919	0.80[ASN][1000 genomes]
rs4975920	0.89[ASN][1000 genomes]
rs4975925	0.80[ASN][1000 genomes]
rs4975926	0.80[ASN][1000 genomes]
rs4975960	0.92[ASN][1000 genomes]
rs4975962	0.92[ASN][1000 genomes]
rs4975963	0.82[ASN][1000 genomes]
rs4975964	0.94[ASN][1000 genomes]
rs4975965	0.83[AMR][1000 genomes]
rs4975966	0.97[ASN][1000 genomes]
rs4975967	0.97[ASN][1000 genomes]
rs4975968	0.92[ASN][1000 genomes]
rs4975969	0.87[ASN][1000 genomes]
rs4975970	0.91[ASN][1000 genomes]
rs4975971	0.87[ASN][1000 genomes]
rs4975972	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4975974	0.89[ASN][1000 genomes]
rs4975975	0.88[ASN][1000 genomes]
rs4975976	0.89[ASN][1000 genomes]
rs4975977	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4975978	0.89[ASN][1000 genomes]
rs4975979	0.88[ASN][1000 genomes]
rs55638678	0.85[ASN][1000 genomes]
rs7293345	0.83[ASN][1000 genomes]
rs7293371	0.80[ASN][1000 genomes]
rs7293434	0.85[EUR][1000 genomes]
rs8175389	0.89[ASN][1000 genomes]
rs8175427	0.84[ASN][1000 genomes]
rs8185095	0.92[ASN][1000 genomes]
rs8185100	0.84[EUR][1000 genomes]
rs8185180	0.92[ASN][1000 genomes]
rs8185183	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8185184	0.90[ASN][1000 genomes]
rs8185192	0.89[ASN][1000 genomes]
rs8185225	0.83[ASN][1000 genomes]
rs8185253	0.92[ASN][1000 genomes]
rs8185255	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8185287	0.83[EUR][1000 genomes]
rs8185292	0.92[ASN][1000 genomes]
rs8185301	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8185312	0.92[ASN][1000 genomes]
rs8185313	0.97[ASN][1000 genomes]
rs8185314	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8185316	0.92[ASN][1000 genomes]
rs8185338	0.94[ASN][1000 genomes]
rs8185361	0.92[ASN][1000 genomes]
rs8185385	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8188054	0.80[EUR][1000 genomes]
rs8188068	0.91[ASN][1000 genomes]
rs8188077	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8188149	0.84[EUR][1000 genomes]
rs8188158	0.92[ASN][1000 genomes]
rs8188221	0.87[ASN][1000 genomes]
rs9292936	0.94[ASN][1000 genomes]
rs9687218	0.87[ASN][1000 genomes]
rs9716588	0.90[ASN][1000 genomes]
rs9717195	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027084	chr5:45675353-46389261	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024533	chr5:45840303-46389261	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv526696	chr5:45892788-46348483	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1035033	chr5:45898541-46389261	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1020758	chr5:45899779-46389261	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1024568	chr5:45905997-46389261	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1028073	chr5:45906782-46389261	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1023025	chr5:45916036-46389261	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1034474	chr5:45921127-46389261	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1017281	chr5:45922311-46389261	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1025907	chr5:45931038-46389261	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1027296	chr5:45939287-46389261	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1033036	chr5:45953688-46334867	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1023770	chr5:45953688-46389261	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1034167	chr5:45962084-46334867	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv525576	chr5:45996902-46348483	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1025880	chr5:46000763-46389261	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1017988	chr5:46035145-46389261	Bivalent/Poised TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1034670	chr5:46101845-46389261	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1030599	chr5:46106823-46313629	ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1028712	chr5:46106823-46389261	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1019374	chr5:46115828-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1019323	chr5:46136820-46313629	ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv1018733	chr5:46136820-46389261	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv482693	chr5:46144519-46323048	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1020434	chr5:46151819-46334867	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1028954	chr5:46151819-46389261	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv1015614	chr5:46152428-46334867	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv1029174	chr5:46152428-46389261	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv469783	chr5:46155847-46356409	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv482501	chr5:46155847-46356409	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv517480	chr5:46160787-46348483	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv1027538	chr5:46161510-46389261	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv1020350	chr5:46191236-46389261	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv1028629	chr5:46195871-46389261	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv1018374	chr5:46196102-46313629	ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1034590	chr5:46196102-46334867	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv598016	chr5:46199395-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv1016871	chr5:46199422-46389261	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv1018263	chr5:46209287-46313629	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
41	nsv1020024	chr5:46209287-46334867	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv1027475	chr5:46209287-46365429	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv1028468	chr5:46209287-46382640	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv1032169	chr5:46209287-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv1017681	chr5:46209870-46389261	ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv1026062	chr5:46209996-46334867	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv1032521	chr5:46224012-46313629	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
48	nsv1024832	chr5:46224012-46334867	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv1020727	chr5:46224012-46365429	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv1034011	chr5:46224012-46389261	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46289400-46304600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:46292200-46293200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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