Variant report

Variant	rs1005418
Chromosome Location	chr7:27610459-27610460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12671723	0.85[EUR][1000 genomes]
rs12700831	0.84[EUR][1000 genomes]
rs1524527	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16874305	0.83[ASN][1000 genomes]
rs17155443	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155498	0.80[ASN][1000 genomes]
rs17155501	0.81[ASN][1000 genomes]
rs17155505	0.81[ASN][1000 genomes]
rs2192559	0.81[ASN][1000 genomes]
rs2391437	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2893292	0.83[EUR][1000 genomes]
rs34536886	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3735570	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462022	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6462023	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6950698	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6975900	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs759272	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7778454	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7779488	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs999491	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27580600-27615000	Weak transcription	Aorta	Aorta
3	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
5	chr7:27582800-27615000	Weak transcription	Placenta	Placenta
6	chr7:27582800-27615200	Weak transcription	Ovary	ovary
7	chr7:27600600-27645600	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:27603000-27626400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:27603200-27615400	Weak transcription	Adipose Nuclei	Adipose
10	chr7:27603200-27631800	Weak transcription	Primary T cells from cord blood	blood
11	chr7:27603600-27626400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:27605000-27614800	Weak transcription	Fetal Kidney	kidney
13	chr7:27605200-27615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:27605200-27617200	Weak transcription	Fetal Intestine Small	intestine
15	chr7:27605200-27624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:27605600-27615200	Weak transcription	Liver	Liver
17	chr7:27605800-27645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:27606800-27614800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:27607200-27614800	Weak transcription	Fetal Lung	lung
20	chr7:27607600-27611000	Weak transcription	HSMM	muscle
21	chr7:27609000-27614800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:27609400-27614800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:27609400-27632600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:27609400-27651000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:27610000-27619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:27610200-27617800	Weak transcription	Primary B cells from cord blood	blood

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