Variant report

Variant	rs10055160
Chromosome Location	chr5:68644517-68644518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10044508	0.81[EUR][1000 genomes]
rs4252228	0.86[EUR][1000 genomes]
rs7712318	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv969960	chr5:68613678-68646127	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3515528	chr5:68624487-68653938	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3515529	chr5:68624487-68653938	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv881767	chr5:68625786-68733698	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10055160	MRPS36	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68628800-68649200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:68629000-68645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:68629000-68646000	Weak transcription	Primary T cells from cord blood	blood
4	chr5:68629000-68646800	Weak transcription	NH-A	brain
5	chr5:68629200-68646000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:68631600-68645600	Weak transcription	Pancreas	Pancrea
7	chr5:68631600-68648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:68632800-68645600	Weak transcription	Fetal Intestine Small	intestine
9	chr5:68636000-68648000	Weak transcription	HepG2	liver
10	chr5:68637200-68646000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:68637800-68645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:68638000-68660200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr5:68638600-68645800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:68638800-68645800	Weak transcription	Liver	Liver
15	chr5:68639200-68663400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:68640400-68646000	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:68640800-68645600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:68641600-68645800	Weak transcription	Fetal Intestine Large	intestine
19	chr5:68642200-68645800	Weak transcription	Placenta	Placenta
20	chr5:68642200-68650400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:68642400-68645600	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:68642400-68645800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr5:68642800-68645800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:68642800-68645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:68642800-68645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:68642800-68646000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:68642800-68646000	Weak transcription	K562	blood
28	chr5:68643000-68645600	Weak transcription	Adipose Nuclei	Adipose
29	chr5:68643000-68645800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:68643000-68645800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:68643000-68645800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:68643000-68646000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:68643000-68664400	Weak transcription	Colonic Mucosa	Colon
34	chr5:68643200-68645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:68643200-68645800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:68643200-68645800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr5:68643200-68645800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:68643200-68645800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:68643200-68645800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:68643200-68645800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr5:68643200-68645800	Weak transcription	Osteobl	bone
42	chr5:68643200-68647800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr5:68643200-68663200	Weak transcription	Small Intestine	intestine
44	chr5:68643400-68645800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:68643400-68645800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr5:68643400-68645800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:68643400-68645800	Weak transcription	Brain Anterior Caudate	brain
48	chr5:68643400-68646000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr5:68643400-68646000	Weak transcription	Fetal Thymus	thymus
50	chr5:68643600-68645800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links