Variant report

Variant	rs10055514
Chromosome Location	chr5:114973564-114973565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr5:114973387-114974304	GM12878	blood:	n/a	n/a
2	RELA	chr5:114973420-114974270	GM12891	blood:	n/a	n/a
3	NFATC1	chr5:114973557-114974179	GM12878	blood:	n/a	n/a
4	NFIC	chr5:114973521-114974368	GM12878	blood:	n/a	n/a
5	RCOR1	chr5:114973396-114974334	GM12878	blood:	n/a	n/a
6	EBF1	chr5:114973365-114974284	GM12878	blood:	n/a	n/a
7	RELA	chr5:114973511-114974197	GM12878	blood:	n/a	n/a
8	PML	chr5:114973502-114974333	GM12878	blood:	n/a	chr5:114974014-114974023
9	RUNX3	chr5:114973435-114974246	GM12878	blood:	n/a	n/a
10	NFIC	chr5:114973513-114974354	GM12878	blood:	n/a	n/a
11	MTA3	chr5:114973347-114974225	GM12878	blood:	n/a	n/a
12	ATF2	chr5:114973554-114974262	GM12878	blood:	n/a	n/a
13	BHLHE40	chr5:114973381-114974114	GM12878	blood:	n/a	n/a
14	IRF4	chr5:114973554-114974281	GM12878	blood:	n/a	n/a
15	CEBPB	chr5:114973523-114974259	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114971626..114974342-chr5:115178110..115179917,2	K562	blood:
2	chr5:114970607..114974645-chr5:114975238..114977621,3	K562	blood:
3	chr5:114970889..114973875-chr5:114975413..114978406,3	MCF-7	breast:
4	chr5:114972992..114975914-chr5:115155123..115157177,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10051170	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10055339	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10060594	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10069695	0.92[ASN][1000 genomes]
rs10075869	0.91[ASN][1000 genomes]
rs10077239	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11953315	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11956382	0.82[EUR][1000 genomes]
rs13164371	0.83[EUR][1000 genomes]
rs2052834	0.92[ASN][1000 genomes]
rs2303746	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs256963	0.91[ASN][1000 genomes]
rs56104517	0.82[AMR][1000 genomes]
rs6594895	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9326970	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114970400-114974000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:114970600-114974400	Weak transcription	Liver	Liver
3	chr5:114971600-114975400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:114971800-114976800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:114972000-114975600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:114972200-114973600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:114972400-114974000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:114972800-114974400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:114972800-114976800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:114972800-114977000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:114973000-114974200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:114973400-114973600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:114973400-114973600	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
14	chr5:114973400-114974200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:114973400-114974200	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links