The 2.0 version of rSNPBase

Variant report

Variant rs10055806
Chromosome Location chr5:60620256-60620257
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60613400-60621000 Enhancers Primary monocytes fromperipheralblood blood
2 chr5:60615600-60620600 Enhancers Sigmoid Colon Sigmoid Colon
3 chr5:60615800-60624200 Weak transcription Colon Smooth Muscle Colon
4 chr5:60615800-60624600 Weak transcription Rectal Smooth Muscle rectum
5 chr5:60616000-60624600 Weak transcription Fetal Stomach stomach
6 chr5:60616200-60625000 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr5:60616400-60624400 Weak transcription Stomach Smooth Muscle stomach
8 chr5:60616400-60625000 Weak transcription Gastric stomach
9 chr5:60616600-60622200 Weak transcription Adipose Nuclei Adipose
10 chr5:60616600-60624000 Weak transcription Brain Cingulate Gyrus brain
11 chr5:60616600-60624000 Weak transcription Left Ventricle heart
12 chr5:60616800-60624400 Weak transcription Fetal Heart heart
13 chr5:60616800-60625800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr5:60617000-60626200 Weak transcription Esophagus oesophagus
15 chr5:60617200-60620400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
16 chr5:60617400-60621400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr5:60617400-60624200 Weak transcription Primary hematopoietic stem cells blood
18 chr5:60617400-60625600 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr5:60618000-60620400 Enhancers HUVEC blood vessel
20 chr5:60618200-60620400 Enhancers Stomach Mucosa stomach
21 chr5:60618800-60620400 Enhancers Rectal Mucosa Donor 29 rectum
22 chr5:60619200-60620400 Enhancers Rectal Mucosa Donor 31 rectum
23 chr5:60619200-60622200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr5:60619200-60623400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr5:60619200-60623600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:60619200-60623600 Weak transcription Hela-S3 cervix
27 chr5:60619200-60623600 Weak transcription NHEK skin
28 chr5:60619200-60624000 Weak transcription Lung lung
29 chr5:60619200-60624400 Weak transcription Fetal Brain Male brain
30 chr5:60619200-60624600 Weak transcription Fetal Muscle Leg muscle
31 chr5:60619200-60624600 Weak transcription Right Atrium heart
32 chr5:60619200-60624600 Weak transcription Spleen Spleen
33 chr5:60619200-60625600 Weak transcription Aorta Aorta
34 chr5:60619400-60622600 Weak transcription NH-A brain
35 chr5:60619400-60623200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr5:60619400-60623200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr5:60619400-60623200 Weak transcription HMEC breast
38 chr5:60619400-60623200 Weak transcription NHDF-Ad bronchial
39 chr5:60619400-60623600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr5:60619400-60623800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr5:60619400-60623800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr5:60619400-60624800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr5:60619400-60624800 Weak transcription Fetal Kidney kidney
44 chr5:60619400-60626200 Weak transcription Small Intestine intestine
45 chr5:60619600-60621200 Enhancers Monocytes-CD14+_RO01746 blood
46 chr5:60619600-60623200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr5:60619800-60621200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr5:60619800-60622000 Weak transcription Muscle Satellite Cultured Cells --
49 chr5:60619800-60623800 Weak transcription Fetal Intestine Large intestine
50 chr5:60619800-60624000 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015