Variant report

Variant	rs10055884
Chromosome Location	chr5:58405491-58405492
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10070138	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs13362115	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7713369	0.87[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830313	chr5:58273724-58421098	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58396200-58420000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:58399400-58419400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:58400800-58412200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:58401000-58405800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:58401000-58407800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:58401000-58408000	Weak transcription	Fetal Brain Female	brain
7	chr5:58401000-58412200	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:58401000-58412400	Weak transcription	Right Atrium	heart
9	chr5:58401000-58413200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:58401000-58418600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:58401400-58411400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:58401800-58410600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:58403600-58412000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:58404000-58406000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:58404000-58408000	Weak transcription	Pancreas	Pancrea
16	chr5:58404000-58408600	Genic enhancers	A549	lung
17	chr5:58404000-58411000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:58404000-58412400	Weak transcription	Psoas Muscle	Psoas
19	chr5:58404200-58412200	Weak transcription	Hela-S3	cervix
20	chr5:58404200-58414200	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:58405000-58407200	Enhancers	Adipose Nuclei	Adipose
22	chr5:58405400-58405800	Enhancers	Left Ventricle	heart
23	chr5:58405400-58406000	Enhancers	Fetal Heart	heart
24	chr5:58405400-58406600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr5:58405400-58411200	Weak transcription	HMEC	breast

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