Variant report

Variant	rs1005605
Chromosome Location	chr14:72218345-72218346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132111	0.85[ASN][1000 genomes]
rs10137642	0.97[ASN][1000 genomes]
rs1204988	0.97[ASN][1000 genomes]
rs1204992	0.94[ASN][1000 genomes]
rs1204995	0.91[ASN][1000 genomes]
rs1204996	0.91[ASN][1000 genomes]
rs1204997	0.91[ASN][1000 genomes]
rs1468373	1.00[ASN][1000 genomes]
rs2286135	0.82[ASN][1000 genomes]
rs2286136	0.82[ASN][1000 genomes]
rs4140799	0.82[ASN][1000 genomes]
rs757744	0.94[ASN][1000 genomes]
rs8015004	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1047559	chr14:72151736-72282151	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72206000-72219600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:72207200-72221400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:72214200-72220000	Enhancers	K562	blood
4	chr14:72215400-72220200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:72215800-72220800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:72216600-72219400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:72216600-72220200	Weak transcription	Spleen	Spleen
8	chr14:72216800-72219600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:72217000-72220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:72217200-72219400	Weak transcription	Fetal Thymus	thymus
11	chr14:72217200-72219400	Weak transcription	Dnd41	blood
12	chr14:72217600-72221200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:72217800-72219400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:72217800-72219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:72218000-72219200	Weak transcription	HSMM	muscle
16	chr14:72218000-72219400	Weak transcription	NH-A	brain
17	chr14:72218000-72219600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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