Variant report

Variant	rs10056171
Chromosome Location	chr5:90626344-90626345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10050640	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs10073893	0.91[AFR][1000 genomes]
rs10074242	1.00[EUR][1000 genomes]
rs55961630	1.00[EUR][1000 genomes]
rs73191043	1.00[EUR][1000 genomes]
rs73773346	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	esv3521695	chr5:90623146-90627244	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3521693	chr5:90623296-90627194	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1810842	chr5:90623586-90626344	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1814682	chr5:90623586-90626344	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1809806	chr5:90624283-90626344	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90619000-90629200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:90620400-90627600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:90621800-90627600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:90621800-90634600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:90623200-90627800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:90625200-90627400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:90625200-90634800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:90625400-90627400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:90625400-90627400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:90625400-90627400	Weak transcription	HepG2	liver
11	chr5:90625400-90627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:90625400-90627600	Weak transcription	Thymus	Thymus
13	chr5:90625600-90627000	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:90625600-90627200	Weak transcription	K562	blood
15	chr5:90625600-90635000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:90625800-90627400	Weak transcription	A549	lung
17	chr5:90625800-90627600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:90626200-90627600	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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