Variant report

Variant	rs10056322
Chromosome Location	chr5:35991938-35991939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10044791	1.00[AMR][1000 genomes]
rs2453301	1.00[YRI][hapmap]
rs55706410	1.00[AMR][1000 genomes]
rs55929632	1.00[AMR][1000 genomes]
rs56392607	1.00[AMR][1000 genomes]
rs61710272	1.00[AMR][1000 genomes]
rs73092050	1.00[AMR][1000 genomes]
rs73748710	1.00[AMR][1000 genomes]
rs73750046	1.00[AMR][1000 genomes]
rs73750049	1.00[AMR][1000 genomes]
rs73750058	1.00[AMR][1000 genomes]
rs73750059	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35988600-35992200	Active TSS	Fetal Kidney	kidney
2	chr5:35990200-35992000	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr5:35991600-35992000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:35991600-35992000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr5:35991600-35992000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:35991600-35992000	Enhancers	Fetal Muscle Leg	muscle
7	chr5:35991600-35992000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr5:35991600-35992400	Weak transcription	Psoas Muscle	Psoas
9	chr5:35991600-35992600	Enhancers	Liver	Liver
10	chr5:35991800-35992000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:35991800-35992000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:35991800-35992000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:35991800-35992000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr5:35991800-35992000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr5:35991800-35992200	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr5:35991800-35992200	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr5:35991800-35995200	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links