Variant report

Variant	rs10057772
Chromosome Location	chr5:111976736-111976737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111972172..111973807-chr5:111975493..111977532,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10077345	0.93[EUR][1000 genomes]
rs72795807	1.00[AFR][1000 genomes]
rs7709999	1.00[GIH][hapmap]
rs894147	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111964800-111978200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:111972600-111978400	Weak transcription	Pancreas	Pancrea
3	chr5:111973000-111978000	Weak transcription	Fetal Heart	heart
4	chr5:111973800-111976800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:111975400-111979000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:111975600-111977600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:111975800-111977000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:111975800-111977400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:111975800-111977600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:111976000-111976800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:111976000-111976800	Enhancers	Adipose Nuclei	Adipose
12	chr5:111976000-111977000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:111976000-111977200	Enhancers	Brain Anterior Caudate	brain
14	chr5:111976000-111977200	Enhancers	Brain Substantia Nigra	brain
15	chr5:111976000-111977200	Enhancers	Fetal Muscle Leg	muscle
16	chr5:111976000-111977400	Enhancers	HSMMtube	muscle
17	chr5:111976200-111977200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:111976200-111977200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:111976400-111977000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:111976400-111977200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:111976400-111977400	Enhancers	Brain Hippocampus Middle	brain
22	chr5:111976600-111976800	Enhancers	Fetal Muscle Trunk	muscle
23	chr5:111976600-111977200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:111976600-111977200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr5:111976600-111977200	Enhancers	Brain Cingulate Gyrus	brain

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