Variant report

Variant	rs1005857
Chromosome Location	chr1:159092138-159092139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35525457	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1005857	AIM2	cis	cerebellum	SCAN
rs1005857	RAB13	cis	parietal	SCAN
rs1005857	C1orf189	cis	cerebellum	SCAN
rs1005857	APCS	cis	parietal	SCAN
rs1005857	SLC39A1	cis	parietal	SCAN
rs1005857	CD5L	cis	cerebellum	SCAN
rs1005857	SUMO1P3	cis	cerebellum	SCAN
rs1005857	PKLR	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159091200-159092400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:159091400-159092400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:159091400-159092400	Enhancers	HMEC	breast
4	chr1:159091400-159092400	Enhancers	NHDF-Ad	bronchial
5	chr1:159091800-159092400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:159091800-159092400	Enhancers	NH-A	brain
7	chr1:159092000-159092200	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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