Variant report

Variant	rs1005955
Chromosome Location	chr12:40340849-40340850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10747956	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877847	0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs1390952	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1908912	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs884864	0.86[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40334000-40343000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:40334200-40343600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:40337400-40350600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:40337800-40341000	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:40338600-40346600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:40339200-40341600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr12:40340000-40341000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:40340600-40342200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:40340600-40342200	Weak transcription	Ovary	ovary
11	chr12:40340800-40342400	Weak transcription	Fetal Intestine Large	intestine
12	chr12:40340800-40346400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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