Variant report

Variant	rs10059604
Chromosome Location	chr5:101937313-101937314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr5:101936486-101937350	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr5:101936516-101937713	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000247402	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10035507	0.93[ASN][1000 genomes]
rs10038730	0.93[ASN][1000 genomes]
rs10057940	1.00[ASN][1000 genomes]
rs10059568	1.00[ASN][1000 genomes]
rs10066065	1.00[ASN][1000 genomes]
rs10069964	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070269	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073454	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10077046	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477819	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10479237	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10515328	0.93[ASN][1000 genomes]
rs10515329	0.93[ASN][1000 genomes]
rs13357560	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361792	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502843	0.93[ASN][1000 genomes]
rs1502850	0.93[ASN][1000 genomes]
rs17150488	0.93[ASN][1000 genomes]
rs17151033	0.93[ASN][1000 genomes]
rs17151574	0.93[ASN][1000 genomes]
rs17152198	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28415625	0.93[ASN][1000 genomes]
rs56181501	0.93[ASN][1000 genomes]
rs58139210	0.93[ASN][1000 genomes]
rs6596500	0.93[ASN][1000 genomes]
rs6862833	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866284	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870113	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870270	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885781	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6885940	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890447	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6898458	0.93[ASN][1000 genomes]
rs72779996	0.93[ASN][1000 genomes]
rs72779997	0.93[ASN][1000 genomes]
rs7705924	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709217	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728204	0.93[ASN][1000 genomes]
rs9327866	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9686862	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9687561	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv830428	chr5:101797242-101958791	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1033193	chr5:101859229-102420837	Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1033405	chr5:101912749-102005038	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
8	esv1805457	chr5:101924774-101940526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101935200-101937800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:101935200-101938000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:101935400-101938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:101935800-101940800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:101935800-101944600	Weak transcription	Pancreas	Pancrea
6	chr5:101936400-101937800	Enhancers	Osteobl	bone
7	chr5:101936400-101938000	Enhancers	HSMM	muscle
8	chr5:101936600-101937800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:101936800-101937800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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