The 2.0 version of rSNPBase

Variant report

Variant rs1005980
Chromosome Location chr19:19271498-19271499
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19249600-19271800 Weak transcription Brain Substantia Nigra brain
2 chr19:19249600-19282600 Weak transcription NHLF lung
3 chr19:19249800-19280600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr19:19250600-19271800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr19:19252800-19272400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr19:19257000-19271600 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr19:19257000-19280400 Weak transcription Gastric stomach
8 chr19:19257000-19280400 Weak transcription Pancreas Pancrea
9 chr19:19258400-19280600 Weak transcription Right Ventricle heart
10 chr19:19258600-19273000 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr19:19258800-19272600 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr19:19258800-19280400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr19:19259000-19290200 Weak transcription Colon Smooth Muscle Colon
14 chr19:19260200-19271600 Weak transcription Primary T cells fromperipheralblood blood
15 chr19:19260200-19280600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr19:19260200-19280600 Weak transcription Brain Hippocampus Middle brain
17 chr19:19260400-19280800 Weak transcription Ovary ovary
18 chr19:19260600-19280400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr19:19260600-19280400 Weak transcription Brain Anterior Caudate brain
20 chr19:19260600-19280400 Weak transcription Duodenum Mucosa Duodenum
21 chr19:19260600-19280400 Weak transcription Lung lung
22 chr19:19260600-19281000 Weak transcription Placenta Amnion Placenta Amnion
23 chr19:19260800-19280800 Weak transcription Liver Liver
24 chr19:19262400-19276200 Weak transcription Stomach Smooth Muscle stomach
25 chr19:19262400-19276400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr19:19263800-19271600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr19:19264200-19280800 Weak transcription HSMMtube muscle
28 chr19:19267000-19280400 Weak transcription Spleen Spleen
29 chr19:19267200-19280800 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr19:19267400-19272000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr19:19267800-19271600 Enhancers Primary B cells from peripheral blood blood
32 chr19:19268000-19271800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr19:19268000-19276400 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr19:19268000-19280400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr19:19268000-19280600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr19:19268000-19280600 Weak transcription Primary T cells from cord blood blood
37 chr19:19268000-19280600 Weak transcription Adipose Nuclei Adipose
38 chr19:19268200-19278800 Weak transcription Fetal Muscle Leg muscle
39 chr19:19268200-19280200 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr19:19268200-19280400 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr19:19268200-19282600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr19:19268400-19271600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr19:19268400-19280400 Weak transcription Fetal Intestine Small intestine
44 chr19:19268400-19280600 Weak transcription Primary T helper cells fromperipheralblood blood
45 chr19:19268400-19280800 Weak transcription Fetal Lung lung
46 chr19:19268800-19287200 Weak transcription Dnd41 blood
47 chr19:19269000-19281000 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr19:19270200-19271800 Enhancers Primary hematopoietic stem cells short term culture blood
49 chr19:19270400-19272600 Enhancers Primary B cells from cord blood blood
50 chr19:19270600-19272000 Enhancers Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015