Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036163	0.84[ASN][1000 genomes]
rs10037511	0.84[ASN][1000 genomes]
rs10045698	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11738200	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11742937	0.95[EUR][1000 genomes]
rs11748375	0.90[EUR][1000 genomes]
rs11749295	0.83[ASN][1000 genomes]
rs12655112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13354091	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1350900	0.92[EUR][1000 genomes]
rs17114459	0.81[ASN][1000 genomes]
rs17114463	0.84[ASN][1000 genomes]
rs17114473	0.82[ASN][1000 genomes]
rs58361474	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793664	0.89[EUR][1000 genomes]
rs72793665	0.92[EUR][1000 genomes]
rs72799217	0.98[EUR][1000 genomes]
rs72799219	0.98[EUR][1000 genomes]
rs7703714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7709157	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1019051	chr5:152550863-153057896	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868912	chr5:152582002-153095306	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152685600-152687200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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