Variant report

Variant	rs10061247
Chromosome Location	chr5:15850728-15850729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10053578	1.00[MEX][hapmap]
rs10061473	0.85[AMR][1000 genomes]
rs10474718	0.87[ASW][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes]
rs13436730	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3381799	chr5:15850681-15850999	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15842400-15853600	Weak transcription	Fetal Stomach	stomach
2	chr5:15845400-15850800	Weak transcription	Brain Anterior Caudate	brain
3	chr5:15849800-15854600	Enhancers	Fetal Heart	heart
4	chr5:15850400-15850800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:15850400-15850800	Enhancers	Brain Substantia Nigra	brain
6	chr5:15850400-15851000	Enhancers	Brain Angular Gyrus	brain
7	chr5:15850400-15851000	Enhancers	Brain Hippocampus Middle	brain
8	chr5:15850400-15851200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:15850400-15851200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:15850400-15851200	Enhancers	Psoas Muscle	Psoas
11	chr5:15850400-15851600	Flanking Active TSS	HUVEC	blood vessel
12	chr5:15850400-15852000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:15850400-15852200	Enhancers	Right Ventricle	heart
14	chr5:15850400-15853800	Enhancers	Adipose Nuclei	Adipose
15	chr5:15850600-15850800	Enhancers	Fetal Lung	lung
16	chr5:15850600-15850800	Enhancers	Right Atrium	heart
17	chr5:15850600-15851000	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:15850600-15851200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr5:15850600-15851200	Enhancers	Left Ventricle	heart
20	chr5:15850600-15851400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:15850600-15851400	Enhancers	Aorta	Aorta

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