Variant report

Variant	rs10061453
Chromosome Location	chr5:94577361-94577362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10059467	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs153291	0.86[AFR][1000 genomes]
rs7704109	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94576000-94578000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94576400-94577600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:94576400-94578000	Enhancers	Primary hematopoietic stem cells	blood
4	chr5:94576800-94578000	Enhancers	Primary T cells from cord blood	blood
5	chr5:94576800-94578000	Enhancers	GM12878-XiMat	blood
6	chr5:94577000-94577600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:94577000-94577600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94577000-94577600	Enhancers	NH-A	brain
9	chr5:94577200-94577600	Flanking Active TSS	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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