Variant report

Variant	rs10061566
Chromosome Location	chr5:164659011-164659012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10050867	0.85[AMR][1000 genomes]
rs10059286	1.00[AMR][1000 genomes]
rs10068749	0.85[AMR][1000 genomes]
rs10079857	1.00[AMR][1000 genomes]
rs73341958	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73341963	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73346121	0.85[AMR][1000 genomes]
rs73346145	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164657400-164659200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:164657800-164659400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr5:164657800-164660200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:164657800-164660600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:164657800-164660600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:164657800-164660800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:164658200-164659200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:164658200-164659400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:164658200-164659400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:164658600-164659400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:164658600-164660000	Enhancers	Fetal Stomach	stomach
12	chr5:164658600-164660600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:164659000-164659400	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links