Variant report

Variant	rs1006223
Chromosome Location	chr1:158432929-158432930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489829	0.80[EUR][1000 genomes]
rs10908649	0.80[EUR][1000 genomes]
rs12129036	0.80[EUR][1000 genomes]
rs12138872	0.80[EUR][1000 genomes]
rs12738597	0.80[EUR][1000 genomes]
rs12742451	0.80[EUR][1000 genomes]
rs12743313	0.80[EUR][1000 genomes]
rs1342938	0.80[EUR][1000 genomes]
rs1342941	0.80[EUR][1000 genomes]
rs1342942	0.80[EUR][1000 genomes]
rs1418842	0.89[ASN][1000 genomes]
rs17627858	0.80[EUR][1000 genomes]
rs34246317	0.80[EUR][1000 genomes]
rs35358362	0.80[EUR][1000 genomes]
rs56125590	0.80[EUR][1000 genomes]
rs57472964	0.80[EUR][1000 genomes]
rs57525598	0.80[EUR][1000 genomes]
rs59524892	0.80[EUR][1000 genomes]
rs59542663	0.80[EUR][1000 genomes]
rs7418542	0.80[EUR][1000 genomes]
rs977384	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv947133	chr1:158431706-158440282	Strong transcription Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158431800-158435400	Weak transcription	Thymus	Thymus
2	chr1:158431800-158443200	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links