The 2.0 version of rSNPBase

Variant report

Variant rs10062402
Chromosome Location chr5:93990907-93990908
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:93955000-93995400 Weak transcription Gastric stomach
2 chr5:93955800-93995400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:93955800-94027600 Weak transcription NH-A brain
4 chr5:93956200-93993200 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr5:93963800-93995800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr5:93964600-93995200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr5:93967400-93991400 Weak transcription Brain Inferior Temporal Lobe brain
8 chr5:93967800-93991000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr5:93968000-93995200 Weak transcription HSMM muscle
10 chr5:93969400-94008400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr5:93971400-93995400 Weak transcription Spleen Spleen
12 chr5:93973800-93995200 Weak transcription Lung lung
13 chr5:93973800-94004200 Weak transcription Stomach Smooth Muscle stomach
14 chr5:93974200-93995400 Weak transcription Ovary ovary
15 chr5:93974400-93995200 Weak transcription Thymus Thymus
16 chr5:93974600-93993400 Strong transcription Hela-S3 cervix
17 chr5:93975600-93995200 Weak transcription Esophagus oesophagus
18 chr5:93975600-93995200 Weak transcription Fetal Stomach stomach
19 chr5:93975600-94012000 Weak transcription Aorta Aorta
20 chr5:93975800-93991000 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr5:93975800-93993400 Weak transcription Muscle Satellite Cultured Cells --
22 chr5:93975800-93994000 Weak transcription Small Intestine intestine
23 chr5:93976800-94025000 Weak transcription Rectal Smooth Muscle rectum
24 chr5:93977000-93993600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr5:93977400-93993600 Weak transcription K562 blood
26 chr5:93977800-93995400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr5:93978000-93995000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr5:93981000-94012000 Weak transcription Left Ventricle heart
29 chr5:93981400-93991000 Weak transcription Adipose Nuclei Adipose
30 chr5:93982600-93995400 Weak transcription Pancreas Pancrea
31 chr5:93985600-93993200 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr5:93987600-93995400 Strong transcription Fetal Thymus thymus
33 chr5:93988200-93991800 Strong transcription Skeletal Muscle Female skeletal muscle
34 chr5:93988400-93991800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr5:93988400-93991800 Strong transcription Primary T helper naive cells fromperipheralblood blood
36 chr5:93988400-93992200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:93988400-93996200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr5:93988600-93997800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr5:93988800-93992000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr5:93988800-93995800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr5:93989000-93992000 Strong transcription Primary neutrophils fromperipheralblood blood
42 chr5:93989000-93995600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr5:93989400-93992200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr5:93989600-93991800 Strong transcription Rectal Mucosa Donor 31 rectum
45 chr5:93989800-93994200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
46 chr5:93989800-93995200 Weak transcription Fetal Intestine Small intestine
47 chr5:93990000-93991000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr5:93990000-93991200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr5:93990000-93991200 ZNF genes & repeats Fetal Intestine Large intestine
50 chr5:93990000-93991600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015