Variant report

Variant	rs1006405
Chromosome Location	chr14:81809443-81809444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81807853..81809549-chr14:81809660..81812402,2	K562	blood:
2	chr14:81685715..81687789-chr14:81806873..81809588,4	MCF-7	breast:
3	chr14:81686333..81688856-chr14:81807631..81809599,2	K562	blood:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11621378	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2012796	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56161464	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56223983	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61560331	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8011477	0.90[ASN][1000 genomes]
rs8016255	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:81803800-81832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81804200-81820000	Weak transcription	K562	blood
4	chr14:81804800-81814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:81805800-81814000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:81806000-81814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:81806600-81810400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:81807400-81810400	Enhancers	Fetal Muscle Leg	muscle
9	chr14:81808000-81811600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:81808000-81820600	Weak transcription	Fetal Kidney	kidney
11	chr14:81808400-81829200	Weak transcription	HMEC	breast
12	chr14:81808600-81811800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:81808600-81820200	Weak transcription	NHEK	skin
14	chr14:81808800-81809800	Enhancers	Psoas Muscle	Psoas
15	chr14:81808800-81810400	Enhancers	Adipose Nuclei	Adipose
16	chr14:81808800-81830200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:81809000-81809800	Enhancers	Ovary	ovary
18	chr14:81809000-81810000	Enhancers	Fetal Brain Female	brain
19	chr14:81809000-81810400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:81809000-81810600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:81809000-81813000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:81809200-81809600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:81809200-81809800	Enhancers	NHDF-Ad	bronchial
24	chr14:81809400-81810200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:81809400-81810200	Enhancers	Brain Germinal Matrix	brain
26	chr14:81809400-81810200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:81809400-81811800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr14:81809400-81817600	Weak transcription	Brain Anterior Caudate	brain

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