The 2.0 version of rSNPBase

Variant report

Variant rs1006431
Chromosome Location chr5:58336970-58336971
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58336000-58337000 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
2 chr5:58336000-58337200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr5:58336000-58337400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:58336000-58338400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr5:58336000-58338400 Weak transcription Gastric stomach
6 chr5:58336000-58338600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr5:58336000-58343600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr5:58336200-58337000 Genic enhancers Hela-S3 cervix
9 chr5:58336200-58337400 Weak transcription Muscle Satellite Cultured Cells --
10 chr5:58336200-58337400 Weak transcription HSMM muscle
11 chr5:58336200-58337600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr5:58336200-58337600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr5:58336200-58338200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr5:58336200-58338200 Weak transcription HSMMtube muscle
15 chr5:58336200-58338400 Weak transcription NHLF lung
16 chr5:58336200-58375600 Weak transcription Left Ventricle heart
17 chr5:58336400-58337400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr5:58336400-58337400 Enhancers Primary T helper naive cells fromperipheralblood blood
19 chr5:58336400-58337600 Enhancers Primary T killer memory cells from peripheral blood blood
20 chr5:58336400-58337600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr5:58336400-58337600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr5:58336400-58337600 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr5:58336400-58337600 Weak transcription Osteobl bone
24 chr5:58336400-58337800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr5:58336400-58338000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr5:58336400-58338000 Weak transcription Fetal Muscle Leg muscle
27 chr5:58336400-58338000 Weak transcription Rectal Smooth Muscle rectum
28 chr5:58336400-58338400 Enhancers Colon Smooth Muscle Colon
29 chr5:58336400-58338400 Weak transcription Stomach Smooth Muscle stomach
30 chr5:58336400-58338600 Enhancers Primary T helper cells fromperipheralblood blood
31 chr5:58336400-58338800 Enhancers Stomach Mucosa stomach
32 chr5:58336600-58337000 Enhancers Primary T helper 17 cells PMA-I stimulated --
33 chr5:58336600-58337000 Enhancers Placenta Amnion Placenta Amnion
34 chr5:58336600-58337200 Weak transcription NHEK skin
35 chr5:58336600-58337400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr5:58336600-58337400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr5:58336600-58337400 Weak transcription Fetal Lung lung
38 chr5:58336600-58337400 Weak transcription Psoas Muscle Psoas
39 chr5:58336600-58337400 Enhancers Rectal Mucosa Donor 29 rectum
40 chr5:58336600-58337400 Weak transcription Small Intestine intestine
41 chr5:58336600-58337600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr5:58336600-58337800 Weak transcription Primary monocytes fromperipheralblood blood
43 chr5:58336600-58337800 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr5:58336600-58337800 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr5:58336600-58338000 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr5:58336600-58338000 Weak transcription Monocytes-CD14+_RO01746 blood
47 chr5:58336600-58338200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr5:58336600-58338200 Weak transcription Right Atrium heart
49 chr5:58336600-58338200 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr5:58336600-58338400 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015