Variant report

Variant	rs10064821
Chromosome Location	chr5:16517905-16517906
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10073481	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv275370	chr5:16517130-16520379	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3426396	chr5:16517402-16519400	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3323813	chr5:16517802-16519050	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
4	chr5:16511200-16519200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:16511800-16519000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:16512000-16519000	Weak transcription	Fetal Intestine Small	intestine
8	chr5:16513200-16519200	Weak transcription	Left Ventricle	heart
9	chr5:16513200-16519800	Weak transcription	Right Ventricle	heart
10	chr5:16515600-16519200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:16515800-16518800	Weak transcription	Brain Angular Gyrus	brain
12	chr5:16516000-16518000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:16516000-16519000	Weak transcription	Brain Substantia Nigra	brain
14	chr5:16516000-16519600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:16517000-16518400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:16517400-16518600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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