Variant report
| Variant | rs10065383 |
|---|---|
| Chromosome Location | chr5:111902482-111902483 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10040858 | 0.90[EUR][1000 genomes] |
| rs10050436 | 0.81[ASN][1000 genomes] |
| rs10055787 | 0.81[ASN][1000 genomes] |
| rs10055908 | 0.81[ASN][1000 genomes] |
| rs10056032 | 0.81[ASN][1000 genomes] |
| rs10060366 | 0.82[ASN][1000 genomes] |
| rs10063938 | 0.81[ASN][1000 genomes] |
| rs10065454 | 0.80[ASN][1000 genomes] |
| rs10065629 | 0.81[ASN][1000 genomes] |
| rs10070796 | 0.81[ASN][1000 genomes] |
| rs10074435 | 0.98[ASN][1000 genomes] |
| rs10077808 | 0.99[ASN][1000 genomes] |
| rs10078416 | 0.81[ASN][1000 genomes] |
| rs10463637 | 0.81[ASN][1000 genomes] |
| rs10463640 | 0.94[ASN][1000 genomes] |
| rs11241173 | 0.98[ASN][1000 genomes] |
| rs11952093 | 0.98[ASN][1000 genomes] |
| rs11955149 | 0.82[ASN][1000 genomes] |
| rs13357891 | 0.81[ASN][1000 genomes] |
| rs1530508 | 0.81[ASN][1000 genomes] |
| rs1530509 | 0.81[ASN][1000 genomes] |
| rs1530510 | 0.81[ASN][1000 genomes] |
| rs2121162 | 0.81[ASN][1000 genomes] |
| rs2121163 | 0.81[ASN][1000 genomes] |
| rs2121164 | 0.81[ASN][1000 genomes] |
| rs28671308 | 1.00[ASN][1000 genomes] |
| rs28703859 | 1.00[ASN][1000 genomes] |
| rs28716336 | 0.81[ASN][1000 genomes] |
| rs35187114 | 0.81[ASN][1000 genomes] |
| rs3934640 | 0.95[ASN][1000 genomes] |
| rs4535502 | 0.85[EUR][1000 genomes] |
| rs55655201 | 0.98[ASN][1000 genomes] |
| rs66626928 | 0.81[ASN][1000 genomes] |
| rs67793660 | 0.98[ASN][1000 genomes] |
| rs72793937 | 0.95[ASN][1000 genomes] |
| rs72793965 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7711347 | 0.81[ASN][1000 genomes] |
| rs9790874 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599368 | chr5:111399885-112032675 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111898400-111909000 | Weak transcription | Fetal Heart | heart |
| 2 | chr5:111899600-111904200 | Weak transcription | Aorta | Aorta |
