Variant report

Variant	rs10065497
Chromosome Location	chr5:14812959-14812960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14809897..14811757-chr5:14812423..14814739,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10037504	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10051404	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10054510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705919	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv948447	chr5:14771247-14852610	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14778200-14817200	Weak transcription	Fetal Brain Female	brain
2	chr5:14796400-14821800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:14809400-14813400	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:14809600-14814400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:14809600-14815000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:14810400-14814600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:14810600-14814200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:14810600-14814400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr5:14810600-14814600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr5:14810600-14815400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:14810800-14815600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr5:14810800-14816000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:14810800-14816000	Weak transcription	A549	lung
14	chr5:14811000-14814000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:14811000-14814200	Enhancers	Primary T cells from cord blood	blood
16	chr5:14811200-14814400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:14811200-14816200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:14811200-14816400	Weak transcription	NHEK	skin
19	chr5:14811400-14813000	Weak transcription	HepG2	liver
20	chr5:14811400-14813800	Weak transcription	HSMM	muscle
21	chr5:14811400-14816200	Weak transcription	NH-A	brain
22	chr5:14811400-14816400	Weak transcription	NHLF	lung
23	chr5:14811400-14821400	Weak transcription	Fetal Heart	heart
24	chr5:14811600-14813000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:14811600-14813000	Enhancers	Osteobl	bone
26	chr5:14811600-14813200	Enhancers	GM12878-XiMat	blood
27	chr5:14811600-14813600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:14811600-14813600	Weak transcription	Fetal Intestine Small	intestine
29	chr5:14811600-14813600	Weak transcription	Left Ventricle	heart
30	chr5:14811600-14814200	Enhancers	Dnd41	blood
31	chr5:14811600-14815000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:14811600-14815600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr5:14811600-14815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:14811600-14815800	Weak transcription	HMEC	breast
35	chr5:14811600-14816200	Weak transcription	Fetal Brain Male	brain
36	chr5:14811600-14816200	Weak transcription	NHDF-Ad	bronchial
37	chr5:14811600-14816400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr5:14811600-14816400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr5:14811600-14816600	Weak transcription	Brain Anterior Caudate	brain
40	chr5:14811600-14816800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:14811600-14816800	Weak transcription	Adipose Nuclei	Adipose
42	chr5:14811600-14816800	Weak transcription	Liver	Liver
43	chr5:14811600-14816800	Weak transcription	Lung	lung
44	chr5:14811600-14819400	Weak transcription	Esophagus	oesophagus
45	chr5:14811600-14825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:14811600-14827400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:14811600-14827600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr5:14811600-14843800	Weak transcription	Fetal Intestine Large	intestine
49	chr5:14811600-14861200	Weak transcription	Colonic Mucosa	Colon
50	chr5:14811800-14816000	Weak transcription	Brain Hippocampus Middle	brain

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