Variant report

Variant	rs10066709
Chromosome Location	chr5:93174451-93174452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10063252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
2	chr5:93131200-93179200	Weak transcription	Ovary	ovary
3	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
4	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
8	chr5:93162200-93179600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:93163800-93179800	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:93164600-93180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:93165000-93179800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:93166400-93180400	Weak transcription	Primary B cells from cord blood	blood
13	chr5:93167400-93178200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:93167400-93180200	Weak transcription	Primary T cells from cord blood	blood
15	chr5:93168200-93179400	Weak transcription	HSMM	muscle
16	chr5:93174200-93179800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:93174400-93216800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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