Variant report

Variant	rs10066733
Chromosome Location	chr5:118759324-118759325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118754174..118756633-chr5:118758402..118759986,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10036783	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10072256	1.00[CEU][hapmap]
rs28749876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55727264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv965533	chr5:118738884-118762384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118753800-118762800	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:118754800-118762200	Weak transcription	K562	blood
3	chr5:118755000-118759400	Enhancers	Liver	Liver
4	chr5:118756200-118762200	Weak transcription	Stomach Mucosa	stomach
5	chr5:118756400-118761600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:118756600-118761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:118756800-118761600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:118756800-118761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:118756800-118762400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:118756800-118762800	Weak transcription	Placenta	Placenta
11	chr5:118757200-118761800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:118757200-118762000	Weak transcription	Primary B cells from cord blood	blood
13	chr5:118758000-118759800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:118758000-118759800	Enhancers	HMEC	breast
15	chr5:118758200-118759400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:118758200-118759800	Enhancers	Fetal Muscle Leg	muscle
17	chr5:118758400-118759400	Weak transcription	Esophagus	oesophagus
18	chr5:118758400-118759600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:118759000-118759800	Enhancers	HSMMtube	muscle
20	chr5:118759000-118761200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:118759000-118762000	Weak transcription	Adipose Nuclei	Adipose
22	chr5:118759200-118761400	Weak transcription	Primary monocytes fromperipheralblood	blood

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