Variant report

Variant	rs10066760
Chromosome Location	chr5:177798592-177798593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177790380..177792280-chr5:177796021..177798764,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035700	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10040494	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070963	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10070973	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10073512	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076768	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10079261	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079266	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079384	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079753	0.93[EUR][1000 genomes]
rs13156299	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156932	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13156933	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13172345	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13182048	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182062	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13188035	1.00[ASN][1000 genomes]
rs17081153	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28488884	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2973730	1.00[ASN][1000 genomes]
rs34142157	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804728	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34970888	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35051026	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35063570	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35531362	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35566599	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71611428	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710007	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721507	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7726903	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7732663	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733534	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
5	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1027165	chr5:177693601-177843314	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv883211	chr5:177787515-177820134	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv462569	chr5:177787515-177821665	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv600398	chr5:177787515-177821665	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv883212	chr5:177790952-177820134	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177797200-177798600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:177797200-177798600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:177797600-177798600	Weak transcription	Thymus	Thymus
4	chr5:177797800-177800600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:177798200-177798600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:177798200-177798800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:177798200-177798800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:177798200-177798800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:177798200-177798800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:177798200-177798800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:177798200-177798800	Enhancers	Right Atrium	heart
12	chr5:177798200-177799000	Enhancers	Fetal Lung	lung
13	chr5:177798200-177799000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr5:177798200-177799200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:177798200-177799200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr5:177798200-177799800	Enhancers	Placenta	Placenta
17	chr5:177798200-177800400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr5:177798400-177798600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:177798400-177798600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
20	chr5:177798400-177798600	Enhancers	Gastric	stomach
21	chr5:177798400-177798800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:177798400-177798800	Enhancers	Adipose Nuclei	Adipose
23	chr5:177798400-177798800	Enhancers	Aorta	Aorta
24	chr5:177798400-177798800	Enhancers	Left Ventricle	heart
25	chr5:177798400-177798800	Enhancers	Spleen	Spleen
26	chr5:177798400-177799000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:177798400-177799000	Enhancers	Stomach Smooth Muscle	stomach
28	chr5:177798400-177799200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr5:177798400-177799400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:177798400-177799400	Enhancers	Right Ventricle	heart
31	chr5:177798400-177799600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr5:177798400-177799600	Enhancers	Colonic Mucosa	Colon
33	chr5:177798400-177799800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr5:177798400-177799800	Enhancers	Ovary	ovary

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