Variant report

Variant	rs10067334
Chromosome Location	chr5:147548021-147548022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:147547914-147548136	H1-hESC	embryonic stem cell:	n/a	n/a
2	CEBPB	chr5:147547846-147548123	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SPINK14	TF binding region

Extended variants
information (count: 130 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10052031	0.81[EUR][1000 genomes]
rs10058776	0.84[EUR][1000 genomes]
rs10061827	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10063951	0.80[EUR][1000 genomes]
rs10065999	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10068904	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10068922	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10068988	0.96[CEU][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10070470	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10074328	0.83[EUR][1000 genomes]
rs10075227	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10077607	0.80[EUR][1000 genomes]
rs10079388	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10079716	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs10477363	0.83[EUR][1000 genomes]
rs10491344	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11168037	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11168038	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11168039	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11168041	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11743040	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11743518	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11743523	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11745313	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11748034	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12188857	0.96[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12189210	0.91[EUR][1000 genomes]
rs12332436	0.92[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs12332677	0.92[CEU][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs12515246	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12515885	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12516461	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12519059	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12519106	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12519629	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12521387	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12522694	0.90[EUR][1000 genomes]
rs13154742	0.82[EUR][1000 genomes]
rs13174534	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13174816	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13174845	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13175245	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13185600	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13360182	0.92[CEU][hapmap]
rs1368305	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1368306	0.93[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1432689	0.93[ASW][hapmap];0.89[CEU][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1558410	0.83[EUR][1000 genomes]
rs17096690	0.93[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17096693	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17107871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1812484	0.83[EUR][1000 genomes]
rs1897532	0.84[EUR][1000 genomes]
rs1897533	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1974627	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1974628	0.83[EUR][1000 genomes]
rs1974629	0.83[EUR][1000 genomes]
rs2017896	0.85[EUR][1000 genomes]
rs2159661	0.83[EUR][1000 genomes]
rs2191680	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2191681	0.83[EUR][1000 genomes]
rs2400488	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2400491	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2400492	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2400493	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2400494	0.83[EUR][1000 genomes]
rs2400495	0.83[EUR][1000 genomes]
rs2400496	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2400497	0.83[EUR][1000 genomes]
rs2400498	0.83[EUR][1000 genomes]
rs28406596	0.84[EUR][1000 genomes]
rs28624399	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28667181	0.84[EUR][1000 genomes]
rs28701955	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34211205	0.84[EUR][1000 genomes]
rs34506706	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35507985	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35696310	0.80[EUR][1000 genomes]
rs4133459	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4254894	0.96[CEU][hapmap]
rs4259160	0.83[EUR][1000 genomes]
rs4269285	0.96[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4270684	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4452547	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4498243	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4499819	0.91[EUR][1000 genomes]
rs4705231	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4705232	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4705233	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4705234	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580534	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580535	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6580536	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6860003	0.80[EUR][1000 genomes]
rs6865006	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6865474	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6869054	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6872890	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6875563	0.84[EUR][1000 genomes]
rs6881658	0.96[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs6884944	0.80[EUR][1000 genomes]
rs6894796	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6895745	0.96[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs7442844	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7442875	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7444240	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7445428	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7445725	0.83[EUR][1000 genomes]
rs7448271	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7449160	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs767568	0.83[EUR][1000 genomes]
rs767569	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs767570	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7703690	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7703761	0.83[EUR][1000 genomes]
rs7705007	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7717500	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7717699	0.85[EUR][1000 genomes]
rs7719535	0.82[EUR][1000 genomes]
rs7732604	0.83[EUR][1000 genomes]
rs9285669	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9325077	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9325078	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9325084	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9325088	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs963016	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9885451	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv968858	chr5:147544134-147548438	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10067334	FFAR2	trans	cerebellum	SCAN
rs10067334	SPINK6	cis	Esophagus Mucosa	GTEx
rs10067334	SPINK1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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