Variant report

Variant	rs10067727
Chromosome Location	chr5:1945817-1945818
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:1793350..1795860-chr5:1944846..1947402,2	MCF-7	breast:
2	chr5:1936412..1938258-chr5:1944303..1946784,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10036475	0.94[ASN][1000 genomes]
rs10055976	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10057823	0.88[ASN][1000 genomes]
rs10064753	0.95[ASN][1000 genomes]
rs10074172	0.95[ASN][1000 genomes]
rs11739683	0.95[ASN][1000 genomes]
rs11743291	0.95[ASN][1000 genomes]
rs11746331	0.95[ASN][1000 genomes]
rs11747471	0.95[ASN][1000 genomes]
rs11748657	0.95[ASN][1000 genomes]
rs11749700	0.95[ASN][1000 genomes]
rs28394513	0.84[ASN][1000 genomes]
rs4975773	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv880653	chr5:1892995-1946697	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv880381	chr5:1895829-1946697	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv508344	chr5:1905222-1976860	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv881562	chr5:1907974-1976187	Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv880964	chr5:1912921-1953161	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv980962	chr5:1932426-1945863	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1932000-1950800	Weak transcription	Gastric	stomach
2	chr5:1932200-1946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:1935600-1950800	Weak transcription	Pancreas	Pancrea
4	chr5:1938200-1948200	Weak transcription	HMEC	breast
5	chr5:1939000-1965600	Weak transcription	Brain Angular Gyrus	brain
6	chr5:1942600-1946600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:1942600-1947200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:1942600-1947200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:1942600-1953800	Weak transcription	Ovary	ovary
10	chr5:1944000-1946600	Enhancers	Fetal Heart	heart
11	chr5:1944400-1948400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:1944800-1947600	Weak transcription	NHEK	skin
13	chr5:1945200-1946200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:1945400-1947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:1945600-1946200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr5:1945600-1946400	Enhancers	Esophagus	oesophagus
17	chr5:1945600-1946400	Enhancers	Left Ventricle	heart
18	chr5:1945600-1946800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:1945600-1947400	Enhancers	Right Ventricle	heart
20	chr5:1945800-1947200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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