Variant report

Variant	rs1006857
Chromosome Location	chr16:65133617-65133618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1040271	0.84[LWK][hapmap]
rs10500507	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16968437	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16968457	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16968465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16968466	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16968468	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16968474	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60684738	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6498973	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6498974	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7199362	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs74026248	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74026252	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8049948	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs8056507	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr16:65113600-65136400	Weak transcription	Spleen	Spleen
7	chr16:65113600-65138800	Weak transcription	Fetal Muscle Leg	muscle
8	chr16:65113800-65140400	Weak transcription	Fetal Brain Male	brain
9	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr16:65116400-65136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr16:65117400-65141000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr16:65118400-65138400	Weak transcription	Fetal Stomach	stomach
13	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
14	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr16:65124400-65139200	Weak transcription	NHLF	lung
16	chr16:65126600-65140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:65129200-65148400	Weak transcription	Fetal Kidney	kidney
18	chr16:65130200-65147400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr16:65130600-65134000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr16:65131200-65134000	Enhancers	Ovary	ovary
21	chr16:65132200-65134000	Genic enhancers	HSMM	muscle
22	chr16:65132200-65134200	Genic enhancers	Osteobl	bone
23	chr16:65132400-65133800	Enhancers	HSMMtube	muscle
24	chr16:65132600-65134200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:65132600-65134200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr16:65132600-65137000	Strong transcription	Fetal Lung	lung
27	chr16:65132600-65139400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr16:65133200-65134000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr16:65133200-65134000	Enhancers	NHDF-Ad	bronchial
30	chr16:65133200-65134200	Enhancers	HMEC	breast
31	chr16:65133200-65136800	Strong transcription	NH-A	brain
32	chr16:65133400-65133800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr16:65133600-65134000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr16:65133600-65134000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr16:65133600-65141800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links