Variant report

Variant	rs10069558
Chromosome Location	chr5:126175226-126175227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1051644	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126139800-126175400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:126140000-126175400	Strong transcription	Fetal Thymus	thymus
3	chr5:126141000-126177400	Weak transcription	Small Intestine	intestine
4	chr5:126141200-126181800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:126146000-126183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:126146000-126183600	Weak transcription	Left Ventricle	heart
7	chr5:126148200-126182400	Weak transcription	HSMMtube	muscle
8	chr5:126148200-126193200	Weak transcription	Brain Angular Gyrus	brain
9	chr5:126149600-126181400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:126151200-126175400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:126151400-126181400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:126153600-126175400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:126158000-126204600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:126162600-126181200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:126162800-126176000	Weak transcription	Fetal Heart	heart
16	chr5:126162800-126182000	Weak transcription	Brain Anterior Caudate	brain
17	chr5:126163000-126181600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:126163200-126181200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:126163600-126181200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:126163600-126181200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:126163800-126176200	Weak transcription	Ovary	ovary
22	chr5:126163800-126182200	Weak transcription	Colonic Mucosa	Colon
23	chr5:126163800-126182600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:126163800-126193200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:126164000-126182400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:126165600-126181400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:126166000-126177000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:126166000-126181200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:126167200-126181200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:126169600-126181400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:126169600-126182600	Weak transcription	Placenta	Placenta
32	chr5:126169800-126175800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:126169800-126180600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr5:126169800-126181400	Weak transcription	Fetal Kidney	kidney
35	chr5:126169800-126181400	Weak transcription	Osteobl	bone
36	chr5:126169800-126181600	Weak transcription	HSMM	muscle
37	chr5:126169800-126181600	Weak transcription	NHDF-Ad	bronchial
38	chr5:126169800-126181800	Weak transcription	Fetal Brain Male	brain
39	chr5:126169800-126184800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:126170000-126179200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:126170000-126181400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr5:126170000-126181400	Weak transcription	Adipose Nuclei	Adipose
43	chr5:126170200-126181200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr5:126170200-126182200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr5:126170200-126183200	Weak transcription	Lung	lung
46	chr5:126170200-126184800	Weak transcription	Spleen	Spleen
47	chr5:126170200-126186800	Weak transcription	NHLF	lung
48	chr5:126170400-126181400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr5:126170400-126181600	Weak transcription	Fetal Intestine Small	intestine
50	chr5:126170800-126181200	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links