Variant report

Variant	rs10069564
Chromosome Location	chr5:116178814-116178815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10035572	0.89[ASN][1000 genomes]
rs10051070	0.91[ASN][1000 genomes]
rs10051209	0.92[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10053269	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10053279	0.92[ASN][1000 genomes]
rs10073924	0.87[ASN][1000 genomes]
rs1035861	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10463687	0.89[ASN][1000 genomes]
rs10463688	0.89[ASN][1000 genomes]
rs10478313	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241403	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11241405	0.85[ASN][1000 genomes]
rs11956132	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12515487	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12515978	0.85[ASN][1000 genomes]
rs12517201	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519375	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12521549	0.87[ASN][1000 genomes]
rs13163078	0.86[ASN][1000 genomes]
rs13175939	0.97[ASN][1000 genomes]
rs1366158	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1366159	0.97[ASN][1000 genomes]
rs1428007	0.87[ASN][1000 genomes]
rs153582	0.81[ASN][1000 genomes]
rs153585	0.81[ASN][1000 genomes]
rs153586	0.81[ASN][1000 genomes]
rs1544742	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1863966	0.87[ASN][1000 genomes]
rs253896	0.80[ASN][1000 genomes]
rs253897	0.81[ASN][1000 genomes]
rs253899	0.81[ASN][1000 genomes]
rs27514	0.84[ASN][1000 genomes]
rs2900099	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4920937	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6870730	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6896154	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs722958	0.92[ASN][1000 genomes]
rs7705356	0.89[ASN][1000 genomes]
rs7705508	0.89[ASN][1000 genomes]
rs7710040	0.89[ASN][1000 genomes]
rs7710088	0.89[ASN][1000 genomes]
rs9942388	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs999415	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1027701	chr5:116138286-116185586	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10069564	TRIM36	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116178600-116179000	Enhancers	Rectal Mucosa Donor 31	rectum

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