Variant report

Variant	rs10069574
Chromosome Location	chr5:89855077-89855078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:89854731..89856596-chr5:89856787..89860606,4	K562	blood:
2	chr5:89822684..89827061-chr5:89851623..89857043,7	MCF-7	breast:
3	chr5:89768685..89771799-chr5:89852676..89855842,6	MCF-7	breast:
4	chr5:89703976..89707575-chr5:89854064..89857316,4	K562	blood:
5	chr5:89705231..89707575-chr5:89854422..89857316,5	K562	blood:
6	chr5:89854805..89859362-chr5:89860971..89864483,4	K562	blood:
7	chr5:89705209..89706757-chr5:89853526..89855162,2	MCF-7	breast:
8	chr5:89829601..89833585-chr5:89854929..89859978,5	MCF-7	breast:
9	chr5:89769550..89772254-chr5:89851679..89856622,6	MCF-7	breast:
10	chr5:89704382..89708328-chr5:89852696..89856618,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255647	Chromatin interaction
ENSG00000113356	Chromatin interaction
ENSG00000176055	Chromatin interaction
ENSG00000164199	Chromatin interaction
ENSG00000176018	Chromatin interaction
ENSG00000153140	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10057209	1.00[GIH][hapmap];0.83[AMR][1000 genomes]
rs10061554	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10062944	0.83[AMR][1000 genomes]
rs10063133	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10068222	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070071	1.00[GIH][hapmap];0.83[AMR][1000 genomes]
rs10074390	0.83[AMR][1000 genomes]
rs10514329	1.00[GIH][hapmap];0.83[AMR][1000 genomes]
rs10942598	0.83[AMR][1000 genomes]
rs11953762	0.83[AMR][1000 genomes]
rs11960201	0.83[AMR][1000 genomes]
rs12109357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12332360	0.82[ASW][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12332567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12332756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12332758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394638	1.00[GIH][hapmap];0.83[AMR][1000 genomes]
rs1995555	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2886763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56983849	0.90[AMR][1000 genomes]
rs57242895	0.90[AMR][1000 genomes]
rs59103759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61748292	0.83[AMR][1000 genomes]
rs6452891	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6452892	0.90[AMR][1000 genomes]
rs6452893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6452894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6452895	0.83[AMR][1000 genomes]
rs6862493	0.83[AMR][1000 genomes]
rs6879424	1.00[MEX][hapmap]
rs6881886	1.00[GIH][hapmap];0.83[AMR][1000 genomes]
rs6888809	0.83[AMR][1000 genomes]
rs6889466	0.83[AMR][1000 genomes]
rs6890465	0.83[AMR][1000 genomes]
rs6890575	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897313	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73176018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73176092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73177814	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73177822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706392	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7709218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7724959	0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7726094	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7736668	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7737581	0.90[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv882365	chr5:89770768-89882618	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv882366	chr5:89826726-89894564	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89853200-89855200	Active TSS	Fetal Brain Male	brain
2	chr5:89853200-89855600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr5:89853400-89855200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:89853400-89855400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:89853400-89855400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr5:89853400-89855800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr5:89853400-89856200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr5:89853400-89856200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr5:89853600-89855200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:89853600-89855200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:89853600-89855200	Active TSS	Pancreas	Pancrea
12	chr5:89853600-89855400	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr5:89853600-89855400	Active TSS	Brain Anterior Caudate	brain
14	chr5:89853600-89856200	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr5:89853600-89856600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:89853600-89857600	Active TSS	H1 Cell Line	embryonic stem cell
17	chr5:89853800-89855200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:89853800-89855200	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr5:89853800-89855200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
20	chr5:89853800-89855200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:89853800-89855200	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr5:89853800-89855800	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr5:89853800-89856000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:89853800-89856000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:89853800-89856200	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr5:89853800-89858000	Active TSS	K562	blood
27	chr5:89854000-89855200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
28	chr5:89854000-89855200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
29	chr5:89854000-89855200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr5:89854000-89855200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:89854000-89855200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:89854000-89855200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:89854000-89855200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
34	chr5:89854000-89855200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
35	chr5:89854000-89855200	Bivalent/Poised TSS	A549	lung
36	chr5:89854000-89855200	Bivalent/Poised TSS	NH-A	brain
37	chr5:89854000-89855400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
38	chr5:89854000-89856200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:89854000-89856400	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr5:89854000-89857200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr5:89854200-89855200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
42	chr5:89854200-89855200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
43	chr5:89854200-89855200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr5:89854200-89855400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:89854200-89858400	Active TSS	Fetal Brain Female	brain
46	chr5:89854400-89855200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
47	chr5:89854400-89855200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
48	chr5:89854400-89855200	Active TSS	Fetal Intestine Small	intestine
49	chr5:89854400-89855200	Bivalent Enhancer	Stomach Mucosa	stomach
50	chr5:89854600-89855200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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