Variant report

Variant	rs10070340
Chromosome Location	chr5:36641769-36641770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36639522..36641829-chr5:36644301..36646645,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10941307	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10941308	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs1645651	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1645657	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1645658	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1651843	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs378427	0.82[JPT][hapmap]
rs4869680	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10070340	NPR3	cis	parietal	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36616800-36651200	Weak transcription	Psoas Muscle	Psoas
2	chr5:36630800-36646200	Weak transcription	NHDF-Ad	bronchial
3	chr5:36631000-36654400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:36632200-36654800	Weak transcription	Fetal Brain Female	brain
5	chr5:36632600-36651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:36632600-36654600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:36634000-36652200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:36635600-36654200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:36635800-36652200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:36637200-36646400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:36637200-36655200	Weak transcription	Hela-S3	cervix
12	chr5:36637400-36646600	Weak transcription	Brain Angular Gyrus	brain
13	chr5:36637400-36654600	Weak transcription	Left Ventricle	heart
14	chr5:36637800-36648400	Enhancers	Fetal Heart	heart
15	chr5:36638400-36644800	Weak transcription	Right Ventricle	heart
16	chr5:36638600-36646600	Weak transcription	Brain Substantia Nigra	brain
17	chr5:36638600-36652000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:36638600-36652200	Weak transcription	NHEK	skin
19	chr5:36638600-36654600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:36638800-36644800	Weak transcription	HSMMtube	muscle
21	chr5:36638800-36646600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:36638800-36646600	Weak transcription	Placenta	Placenta
23	chr5:36638800-36654400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:36639000-36645400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:36639200-36646600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:36639400-36646400	Weak transcription	Brain Anterior Caudate	brain
27	chr5:36639400-36650200	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:36639600-36651800	Weak transcription	Adipose Nuclei	Adipose
29	chr5:36639800-36642200	Weak transcription	HSMM	muscle
30	chr5:36639800-36651400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:36639800-36656400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:36640000-36644000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:36640200-36643000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:36640200-36644200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr5:36640400-36651200	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:36640800-36650000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:36641000-36642000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:36641000-36642400	Enhancers	Osteobl	bone
39	chr5:36641200-36641800	Weak transcription	Fetal Brain Male	brain
40	chr5:36641200-36642000	Weak transcription	Fetal Lung	lung
41	chr5:36641400-36642200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:36641400-36644800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:36641600-36641800	Enhancers	NH-A	brain
44	chr5:36641600-36646000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:36641600-36646600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:36641600-36649800	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links