Variant report

Variant	rs10070926
Chromosome Location	chr5:98362828-98362829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98241174..98243544-chr5:98361759..98364961,3	K562	blood:
2	chr5:98355578..98358107-chr5:98362158..98365732,4	K562	blood:
3	chr5:98263790..98266450-chr5:98362398..98365432,4	MCF-7	breast:
4	chr5:98362205..98363958-chr5:98366950..98369649,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs109843	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13185489	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10070926	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98357400-98368400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:98358200-98366800	Weak transcription	K562	blood
3	chr5:98360000-98363200	Enhancers	Fetal Intestine Large	intestine
4	chr5:98360000-98363200	Enhancers	HepG2	liver
5	chr5:98360000-98363400	Enhancers	Stomach Mucosa	stomach
6	chr5:98360200-98363400	Enhancers	Fetal Intestine Small	intestine
7	chr5:98360200-98369000	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:98360800-98363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:98361000-98363000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:98361200-98363000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:98361200-98363600	Enhancers	Adipose Nuclei	Adipose
12	chr5:98361200-98364400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr5:98361200-98368000	Weak transcription	Osteobl	bone
14	chr5:98361400-98363000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:98361600-98363000	Weak transcription	Fetal Kidney	kidney
16	chr5:98361600-98366000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:98361800-98363000	Weak transcription	A549	lung
18	chr5:98361800-98363200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:98361800-98363200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:98361800-98363400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr5:98361800-98363600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr5:98361800-98363600	Enhancers	Liver	Liver
23	chr5:98361800-98366400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:98362000-98363000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:98362000-98363000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr5:98362000-98363400	Enhancers	Primary T cells fromperipheralblood	blood
27	chr5:98362000-98363400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr5:98362000-98364200	Enhancers	Thymus	Thymus
29	chr5:98362000-98366400	Weak transcription	Colonic Mucosa	Colon
30	chr5:98362000-98367800	Weak transcription	Placenta	Placenta
31	chr5:98362200-98363000	Enhancers	Primary T cells from cord blood	blood
32	chr5:98362200-98363000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr5:98362200-98363000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr5:98362200-98363000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:98362200-98363000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr5:98362200-98363000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr5:98362200-98368400	Weak transcription	Small Intestine	intestine
38	chr5:98362400-98363600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr5:98362400-98363600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr5:98362400-98363600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr5:98362400-98363800	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr5:98362400-98368400	Weak transcription	Brain Hippocampus Middle	brain
43	chr5:98362600-98363400	Flanking Active TSS	Dnd41	blood
44	chr5:98362600-98363600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:98362600-98363800	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr5:98362600-98364400	Enhancers	Fetal Thymus	thymus
47	chr5:98362800-98363400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr5:98362800-98363400	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr5:98362800-98363400	Active TSS	GM12878-XiMat	blood
50	chr5:98362800-98363600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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