Variant report

Variant	rs10071137
Chromosome Location	chr5:28399515-28399516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10062215	0.81[EUR][1000 genomes]
rs10075858	0.81[EUR][1000 genomes]
rs10940730	0.81[EUR][1000 genomes]
rs12332678	0.81[EUR][1000 genomes]
rs13174211	0.81[EUR][1000 genomes]
rs4404691	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4413539	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72752495	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880550	chr5:27863157-28732126	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1026700	chr5:28067287-28978638	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv537707	chr5:28067287-28978638	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1017761	chr5:28270595-28494470	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv537709	chr5:28270595-28494470	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1029219	chr5:28370908-29086506	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv537710	chr5:28370908-29086506	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:28391800-28404000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:28397200-28401200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:28397200-28401200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:28397800-28399600	Enhancers	HSMMtube	muscle
5	chr5:28398200-28403600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:28398600-28402800	Weak transcription	Fetal Heart	heart
7	chr5:28398600-28403600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:28398600-28403800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:28398600-28404000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:28398600-28404000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:28398800-28399800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:28398800-28400000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:28398800-28400000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:28398800-28402400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:28398800-28402800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:28398800-28403600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:28398800-28403800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:28398800-28403800	Weak transcription	HMEC	breast
19	chr5:28398800-28403800	Weak transcription	NH-A	brain
20	chr5:28398800-28404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:28399000-28402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:28399200-28404400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links