Variant report

Variant	rs10071622
Chromosome Location	chr5:75675178-75675179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75673917..75676615-chr5:75683010..75685997,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6870948	0.86[ASN][1000 genomes]
rs6890217	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75668600-75676600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:75668800-75676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:75669000-75676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:75669000-75676400	Weak transcription	Placenta	Placenta
5	chr5:75669000-75676800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:75669000-75682400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:75672800-75676200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:75672800-75676400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:75673000-75676000	Weak transcription	K562	blood
10	chr5:75674000-75677400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:75674200-75676200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:75674200-75677200	Enhancers	Primary hematopoietic stem cells	blood
13	chr5:75674200-75677200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:75674600-75677000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr5:75674800-75675400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr5:75674800-75675400	Flanking Active TSS	HepG2	liver
17	chr5:75674800-75675600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr5:75674800-75675800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:75674800-75675800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr5:75674800-75675800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:75674800-75676000	Enhancers	Primary T cells from cord blood	blood
22	chr5:75674800-75676400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:75675000-75675200	Active TSS	Spleen	Spleen
24	chr5:75675000-75675400	Enhancers	Primary B cells from cord blood	blood
25	chr5:75675000-75675400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:75675000-75675400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr5:75675000-75675400	Enhancers	Fetal Thymus	thymus
28	chr5:75675000-75675400	Enhancers	GM12878-XiMat	blood
29	chr5:75675000-75675400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr5:75675000-75675600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr5:75675000-75675800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:75675000-75675800	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr5:75675000-75675800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr5:75675000-75675800	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr5:75675000-75676200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr5:75675000-75676600	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr5:75675000-75676800	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr5:75675000-75677000	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links