Variant report

Variant	rs10072027
Chromosome Location	chr5:167327433-167327434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1993613	1.00[AMR][1000 genomes]
rs7736360	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167323200-167328000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:167323400-167327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167324800-167327800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:167325000-167327800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:167325200-167328000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:167325600-167327800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:167325600-167328000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:167325800-167327600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:167325800-167327600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:167326200-167327800	Enhancers	HMEC	breast
11	chr5:167326400-167328000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:167326400-167333400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167326600-167327800	Enhancers	NHEK	skin
14	chr5:167326600-167328600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:167326800-167327600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:167326800-167329000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:167326800-167329000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:167326800-167333400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:167326800-167333400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:167327000-167329000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:167327400-167327600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:167327400-167327800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:167327400-167328000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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