Variant report

Variant	rs10072126
Chromosome Location	chr5:116146640-116146641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD10-10	chr5:116145051-116147613	NONHSAT103378

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10035520	0.87[AFR][1000 genomes]
rs10035548	0.87[AFR][1000 genomes]
rs10043304	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1027701	chr5:116138286-116185586	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116145000-116148000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:116145400-116147200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:116145600-116147400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:116145800-116147400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:116146000-116146800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:116146000-116147000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:116146000-116147200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:116146000-116147200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:116146000-116147200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:116146000-116147200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:116146000-116147200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:116146000-116147600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:116146000-116147600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:116146200-116146800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:116146200-116147000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:116146200-116147000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:116146200-116147000	Enhancers	HepG2	liver
18	chr5:116146200-116147200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr5:116146400-116147000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:116146400-116147000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:116146400-116148200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:116146400-116150400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:116146400-116156400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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