Variant report

Variant	rs1007346
Chromosome Location	chr9:95512940-95512941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95506780..95509638-chr9:95511921..95514054,2	K562	blood:
2	chr9:95510041..95513567-chr9:95525566..95528932,4	K562	blood:
3	chr9:95504668..95516688-chr9:95523327..95528935,18	MCF-7	breast:
4	chr9:94894055..94896272-chr9:95510908..95513385,2	K562	blood:
5	chr9:95431607..95434580-chr9:95510913..95513196,3	K562	blood:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction
ENSG00000127080	Chromatin interaction
ENSG00000234537	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16908471	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908498	0.81[AMR][1000 genomes]
rs2101775	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95502400-95516400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:95503400-95518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95503600-95514400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:95503600-95514400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:95503600-95517800	Weak transcription	Fetal Intestine Large	intestine
6	chr9:95503800-95523800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:95507400-95513200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:95507400-95513800	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:95508000-95517800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:95508200-95515000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:95508200-95517800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:95508200-95517800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:95508400-95514400	Weak transcription	Primary T cells from cord blood	blood
14	chr9:95508400-95516400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:95508600-95513000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:95509000-95513000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:95509000-95513000	Enhancers	HSMMtube	muscle
18	chr9:95509400-95513600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:95509600-95513000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:95509600-95517800	Weak transcription	Thymus	Thymus
21	chr9:95509800-95513000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:95509800-95522000	Weak transcription	Liver	Liver
23	chr9:95510000-95513200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr9:95510000-95514000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:95510200-95513200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:95510200-95514200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:95510600-95515000	Weak transcription	GM12878-XiMat	blood
28	chr9:95510800-95514400	Weak transcription	HUVEC	blood vessel
29	chr9:95510800-95514600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:95511000-95513600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:95511000-95515400	Enhancers	Fetal Muscle Leg	muscle
32	chr9:95511000-95516400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr9:95511000-95518000	Weak transcription	Hela-S3	cervix
34	chr9:95511200-95513600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:95511200-95513800	Weak transcription	K562	blood
36	chr9:95511200-95514600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:95511600-95513000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr9:95511800-95513000	Enhancers	Primary B cells from cord blood	blood
39	chr9:95511800-95514400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:95511800-95514600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:95511800-95518000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:95511800-95518000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:95512000-95514800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr9:95512000-95516600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:95512000-95517800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:95512000-95523400	Weak transcription	Aorta	Aorta
47	chr9:95512000-95525000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:95512200-95513000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:95512200-95513000	Enhancers	Brain Cingulate Gyrus	brain
50	chr9:95512200-95513200	Weak transcription	Primary hematopoietic stem cells	blood

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