Variant report

Variant	rs10074832
Chromosome Location	chr5:127536872-127536873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:127093271..127094086-chr5:127536716..127537662,3	MCF-7	breast:
2	chr5:127093273..127093845-chr5:127536845..127537459,3	MCF-7	breast:
3	chr5:126899583..126900171-chr5:127536787..127537567,2	MCF-7	breast:
4	chr22:32616040..32616656-chr5:127536813..127537603,2	MCF-7	breast:
5	chr5:127088829..127090335-chr5:127536854..127538369,2	K562	blood:
6	chr5:127536790..127537566-chr5:127834284..127834940,2	MCF-7	breast:
7	chr5:127417598..127420505-chr5:127534164..127537031,3	MCF-7	breast:
8	chr5:127531533..127534048-chr5:127534783..127536987,2	K562	blood:
9	chr5:126899630..126900600-chr5:127536748..127537750,4	K562	blood:
10	chr5:127210928..127211805-chr5:127536403..127538043,5	MCF-7	breast:
11	chr5:127531948..127534863-chr5:127535374..127538007,4	MCF-7	breast:
12	chr5:127213582..127214540-chr5:127536708..127537793,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000245937	Chromatin interaction
ENSG00000064651	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10067006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213931	1.00[AMR][1000 genomes]
rs10478804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17839661	1.00[AMR][1000 genomes]
rs6862016	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7721945	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127521200-127537200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:127530000-127537000	Weak transcription	Aorta	Aorta
3	chr5:127530000-127537200	Weak transcription	HSMMtube	muscle
4	chr5:127533400-127537000	Weak transcription	Ovary	ovary
5	chr5:127533400-127537000	Weak transcription	NHLF	lung
6	chr5:127534000-127537000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:127534600-127537000	Weak transcription	GM12878-XiMat	blood
8	chr5:127534600-127537400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:127534800-127544200	Weak transcription	Left Ventricle	heart
10	chr5:127535000-127537000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:127535000-127537000	Weak transcription	Fetal Stomach	stomach
12	chr5:127535000-127537800	Enhancers	Fetal Intestine Small	intestine
13	chr5:127535000-127539400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:127535400-127537000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:127535400-127537000	Weak transcription	HSMM	muscle
16	chr5:127535400-127537000	Weak transcription	NH-A	brain
17	chr5:127536400-127537400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:127536400-127537400	Enhancers	Small Intestine	intestine
19	chr5:127536400-127537600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr5:127536400-127537800	Enhancers	Placenta	Placenta
21	chr5:127536600-127537000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
22	chr5:127536600-127537000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:127536600-127537000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:127536600-127537200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr5:127536600-127537400	Enhancers	Brain Cingulate Gyrus	brain
26	chr5:127536600-127537600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:127536600-127537600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr5:127536600-127537600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr5:127536600-127537600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:127536600-127537600	Enhancers	Fetal Brain Male	brain
31	chr5:127536600-127537600	Enhancers	Fetal Heart	heart
32	chr5:127536600-127537600	Enhancers	Fetal Thymus	thymus
33	chr5:127536600-127537600	Flanking Active TSS	A549	lung
34	chr5:127536800-127537000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:127536800-127537000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr5:127536800-127537000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:127536800-127537000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr5:127536800-127537000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr5:127536800-127537000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
40	chr5:127536800-127537000	Enhancers	Primary T cells from cord blood	blood
41	chr5:127536800-127537000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr5:127536800-127537000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:127536800-127537000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:127536800-127537000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:127536800-127537000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr5:127536800-127537000	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr5:127536800-127537000	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr5:127536800-127537000	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr5:127536800-127537000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:127536800-127537000	Flanking Active TSS	Brain Substantia Nigra	brain

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