Variant report

Variant	rs10075659
Chromosome Location	chr5:115065309-115065310
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115062310..115063859-chr5:115064887..115067469,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10045982	1.00[ASN][1000 genomes]
rs10045984	0.98[ASN][1000 genomes]
rs10050890	0.98[ASN][1000 genomes]
rs10052595	0.98[ASN][1000 genomes]
rs10064258	0.99[ASN][1000 genomes]
rs10067465	0.98[ASN][1000 genomes]
rs10071727	0.98[ASN][1000 genomes]
rs10071991	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10074993	1.00[ASN][1000 genomes]
rs10080052	0.99[ASN][1000 genomes]
rs10440764	1.00[ASN][1000 genomes]
rs10477537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10477538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478244	1.00[ASN][1000 genomes]
rs10478245	1.00[ASN][1000 genomes]
rs10478246	0.98[ASN][1000 genomes]
rs10478247	0.96[ASN][1000 genomes]
rs10478248	1.00[ASN][1000 genomes]
rs10478249	1.00[ASN][1000 genomes]
rs10478250	1.00[ASN][1000 genomes]
rs10478252	0.86[ASN][1000 genomes]
rs10478253	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1121481	0.88[ASN][1000 genomes]
rs11740930	1.00[ASN][1000 genomes]
rs11742950	1.00[ASN][1000 genomes]
rs11747871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748556	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750906	1.00[ASN][1000 genomes]
rs12651799	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12654416	0.88[ASN][1000 genomes]
rs12655946	0.98[ASN][1000 genomes]
rs13159452	0.98[ASN][1000 genomes]
rs13164173	0.97[ASN][1000 genomes]
rs13164466	1.00[ASN][1000 genomes]
rs13186692	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13355215	0.91[ASN][1000 genomes]
rs13356510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13358666	0.98[ASN][1000 genomes]
rs13360159	1.00[ASN][1000 genomes]
rs13360899	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361948	1.00[ASN][1000 genomes]
rs13362015	1.00[ASN][1000 genomes]
rs1363358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1363359	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1363360	1.00[ASN][1000 genomes]
rs1960911	0.98[ASN][1000 genomes]
rs34871962	1.00[ASN][1000 genomes]
rs35290049	1.00[ASN][1000 genomes]
rs35502695	0.98[ASN][1000 genomes]
rs35518456	1.00[ASN][1000 genomes]
rs35828343	0.98[ASN][1000 genomes]
rs59934775	0.96[ASN][1000 genomes]
rs67475015	0.99[ASN][1000 genomes]
rs72800476	0.82[ASN][1000 genomes]
rs9326972	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1024641	chr5:115030110-115123474	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1021139	chr5:115036724-115131280	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115059400-115069200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:115060000-115067000	Weak transcription	Liver	Liver
3	chr5:115060600-115081000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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