Variant report

Variant	rs10077495
Chromosome Location	chr5:112712805-112712806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112712448..112713203-chr5:112941932..112942910,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10037845	0.87[YRI][hapmap]
rs10042401	1.00[ASW][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap]
rs10043512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050553	1.00[ASW][hapmap]
rs10054914	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070884	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078931	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11951897	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11960242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110055	0.85[YRI][hapmap]
rs13358281	0.87[YRI][hapmap]
rs7719254	0.82[YRI][hapmap]
rs7720243	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10077495	CHI3L2	trans	lymphoblastoid	seeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112700800-112718000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:112707800-112719000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:112708000-112713800	Weak transcription	HMEC	breast
4	chr5:112708000-112714000	Weak transcription	NHEK	skin
5	chr5:112708000-112716200	Weak transcription	Fetal Kidney	kidney
6	chr5:112708600-112713400	Weak transcription	HUVEC	blood vessel
7	chr5:112710600-112714200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:112711000-112713200	Enhancers	Dnd41	blood
9	chr5:112711400-112713000	Bivalent Enhancer	Primary T cells from cord blood	blood
10	chr5:112711400-112713400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:112711400-112716200	Weak transcription	NH-A	brain
12	chr5:112711600-112714200	Weak transcription	Fetal Stomach	stomach
13	chr5:112711800-112715000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:112711800-112716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:112712400-112713800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr5:112712400-112714000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:112712600-112714000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr5:112712600-112714000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr5:112712600-112714000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr5:112712600-112715400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:112712600-112715800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr5:112712800-112713800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:112712800-112714000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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