Variant report
| Variant | rs10077784 |
|---|---|
| Chromosome Location | chr5:151662617-151662618 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10223090 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11167578 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1422350 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17113066 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17113106 | 0.80[ASN][1000 genomes] |
| rs1922670 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2112537 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4034963 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4034966 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4443412 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4958526 | 0.89[ASN][1000 genomes] |
| rs56741013 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs59339342 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs60040053 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs60666977 | 0.88[ASN][1000 genomes] |
| rs61522636 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6579924 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73279044 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73279045 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73280941 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73280942 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023828 | chr5:151522149-151956217 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830519 | chr5:151588627-151800192 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151657600-151664000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
